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National Key Laboratory of Plant Molecular Genetics

National Center of Plant Gene Research (Shanghai)

National Center for Gene Research, CAS

Key Laboratory of Synthetic Biology, CAS

Key Laboratory of Insect Developmental and Evolutionary Biology, CAS
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Laboratory of Photosynthesis and Environmental Biology

 
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Publications

2018 2017 2016 2015 2014 2013 2012 2011 2010 2009 2008 2007 2006 2005 2004-2002
  1. Shao YY, Lu N, Wu ZF, Cai C, Wang SS, Zhang LL, Xiao SJ, Liu L, Zeng XF, Zheng HJ, Yang C, Zhao ZH, Zhao GP*, Zhou JQ*, Xue XL*, Qin ZJ* (2018). Creating a functionalsingle-chromosome yeast. Nature, 60(7718):331-335
  2. Li SY, Cheng QX, Liu JK, Nie XQ, Zhao GP, Wang J* (2018). CRISPR-Cas12a has both cis- and trans-cleavage activities on single-stranded DNA. Cell Res, 28(4):491-493
  3. Hao Zhang, Yujie Liu, Xiaoqun Nie, Lixia Liu, Qiang Hua, Guo-Ping Zhao, Chen Yang* (2018). The cyanobacterial ornithine–ammonia cycle involves an arginine dihydrolase. Nature Chemical Biology, 14:575-581
  4. Feifei Qi#, Chao Lei#, Fengwei Li, Xingwang Zhang, Jin Wang, Wei Zhang, Zhen Fan, Weichao Li, Gong-Li Tang, Youli Xiao*, Guoping Zhao, Shengying Li* (2018). Deciphering the late steps of rifamycin biosynthesis. Nat Commun, 9:2342
  5. Xinyun Jing, Bingran Xie, Longxian Chen, Niubing Zhang, Yiyi Jiang, Hang Qin, Hongbing Wang, Pei Hao*, Sheng Yang*, Xuan Li* (2018). Implementation of the CRISPR-Cas13a system in fission yeast and its repurposing for precise RNA editing. Nucleic AcidsResearch, 46(15):e90
  6. Xiaoxian Wu#, Diane L. Haakonsen#, Allen G. Sanderlin, Yue J, Liu, Liqiang Shen, Ningning Zhuang, Michael T. Laub*, Yu Zhang* (2018). Structural insights into the unique mechanism of transcription activation by Caulobacter crescentus GcrA. Nucleic AcidsResearch, 46(6):3245-3256
  7. Yang YP, Nie XQ, Jiang YQ, Yang C*, Gu Y*, Jiang WH* (2018). Metabolic regulation in solventogenic clostridia: regulators, mechanisms and engineering. Biotechnol Adv, 36:905-914
  8. Fan XY, Tang BK, Xu YY, Han AX, Shi KX, Wu YK, Ye Y, Wei ML, Niu C, Wong KW, Zhao GP*, Lyu LD* (2018). Oxidation of dCTP contributes to antibiotic lethality in stationary-phase mycobacteria. PNAS, 115(9):2210-2215
  9. YuweiSun, ZhuoChen, JianxuLi, JianhuaLi, HuajunLv, Jingya Yang, Weiwei Li, Dingan Xie, Zhiqiang Xiong, Peng Zhang, Yong Wang* (2018). Diterpenoid UDP-glycosyltransferases from Chinese Sweet Tea and Ashitaba Complete the Biosynthesis of Rubusoside. Molecular Plant, 11(10):1308-1311
  10. Baofu Xu, Zhen Fan, Yongxing Lei, Yu Ping, Amit Jaisi, Youli Xiao* (2018). Insights into Pipecolic Acid Biosynthesis in Huperzia serrata. Org Lett, 20:2195-2198
  11. Yiqing Zhou, Weichao Li, Wenjing You, Zhengao Di, Mingli Wang, Haiyan Zhou, Shuguang Yuan, Nai-Kei Wong, Youli Xiao* (2018). Discovery of Arabidopsis UGT73C1 as a steviol-catalyzing UDP-glycosyltransferase with chemical probes. Chem Commun, 54:7179-7182
  12. Gen Zou, Yanping Jiang, Rui Liu, Zhihua Zhu, Zhihua Zhou* (2018). The putative β-glucosidase BGL3I regulates cellulase induction in Trichoderma reesei. Biotechnol Biofuels, in press
  13. Ping Chen, Xinyun Jing, JianRen, HanCao, Pei Hao, Xuan Li* (2018). Modelling BioNano optical data and simulation study of genome map assembly. Bioinformatics, doi: 10.1093/bioinformatics/bty456.
  14. Weichao Li#, Yiqing Zhou#, Wenjing You#, Mengquan Yang, Yanrong Ma, Mingli Wang, Yong Wang, Shuguang Yuan, Youli Xiao* (2018). Development of Photoaffinity Probe for the Discovery of Steviol Glycosides Biosynthesis Pathway in Stevia rebuadiana and Rapid Substrate Screening. ACSChem Biol, 13:1944-1949
  15. Weichao Li, Yiqing Zhou, Guanghui Tang, Nai-Kei Wong, Mengquan Yang, Dan Tan, Youli Xiao* (2018). Chemoproteomics Reveals the Antiproliferative Potential of Parkinson’s Disease Kinase Inhibitor LRRK2-IN-1 by Targeting PCNA Protein. Mol Pharmaceut, 15:3252-3259
  16. Li SY#, Cheng QX#, Wang JM, Li XY, Zhang ZL, Gao S, Cao RB, Zhao GP, Wang J* (2018). CRISPR-Cas12a-assisted nucleic acid detection. Cell Discov, 4:20
  17. Pingping Wang, Wei Wei, Wei Ye, Xiaodong Li, Wenfang Zhao, Chengshuai Yang, Chaojing Li, Xing Yan*, Zhihua Zhou* (2018). Synthesizing ginsenoside Rh2 in Saccharomyces cerevisiae cell factory at high-efficiency. Cell Discov, in press
  18. Chunyan Liu, Gen Zou, Xing Yan*, Xuguo Zhou* (2018). Screening of multimeric β-xylosidases from the gut microbiome of a higher termite, Globitermes brachycerastes. International Journal of Biological Sciences, 14 (6):608-615
  19. Yongjun Wei, Lei Zhang, Zhihua Zhou, Xing Yan* (2018). Diversity of Gene Clusters for Polyketide and Nonribosomal Peptide Biosynthesis Revealed by Metagenomic Analysis of the Yellow Sea Sediment. Frontiers in Microbiology, (9) 295:1-12
  20. Li Z, Liu X, Wang J, Wang Y, Zheng G, Lu Y, Zhao G, Wang J* (2018). Insight into the Molecular Mechanism of the Transcriptional Regulation of amtB Operon in Streptomyces coelicolor. Front Microbiol, 9:264
  21. Wang X, Yang JJ, Yang S*, Jiang Y* (2018). Unraveling the genetic basis of fast L-arabinose consumption on top of recombinant xylose-fermenting Saccharomyces cerevisiae. Biotechnol Bioeng, doi: 10.1002/bit.26827
  22. Lei C, Wang J, Liu Y, Liu X, Zhao G, Wang J* (2018). A feedback regulatory model for RifQ-mediated repression of rifamycin export in Amycolatopsis mediterranei. Microb Cell Fact, 17(1):14
  23. Sun J, Wang Q, Jiang Y, Wen ZQ, Yang LR, Wu JP*, Yang S* (2018). Genome editing and transcriptional repression in Pseudomonas putida KT2440 via the type II CRISPR system. Microbial cell factories, 17(1):41
  24. Cao Y, Cao R, Huang Y, Zhou H, Liu Y, Li X*, Zhong W*, Hao P* (2018). A comprehensive study on cellular RNA editing activity in response to infections with different subtypes of influenza A viruses. BMC Genomics, 19(Suppl 1):925
  25. Huang Y, Cao Y, Li J, Liu Y, Zhong W, Li X*, Chen C*, Hao P* (2018). A survey on cellular RNA editing activity in response to Candida albicans infections. BMC Genomics, 19(Suppl 1):43
  26. Zhang L, Liu Y, Yang Y, Jiang W*, Gu Y* (2018). A Novel Dual-cre Motif Enables Two-Way Autoregulation of CcpA in Clostridium acetobutylicum.. Applied and Environmental Microbiology, 84(8), pii: e00114-18
  27. Li L, Wei KK, Zheng GS, Liu XC, Chen SX, Jiang WH*, Lu YH* (2018). CRISPR-Cpf1-assisted multiplex genome editing and transcriptional repression in Streptomyces. Applied and Environmental Microbiology, 84(18), pii:e00827-18
  28. Sun BB, Yang JJ, Yang S*, Ye RD*, Chen DJ*, Jiang Y* (2018). A CRISPR-Cpf1-Assisted Non-Homologous End Joining Genome Editing System of Mycobacterium smegmatis. Biotechnology journal, doi:0.1002/biot. 201700588
  29. Yu Y, Tang B, Dai R, Zhang B, Chen L, Yang H, Zhao G*, Ding X* (2018). Identification of the streptothricin and tunicamycin biosynthetic gene clusters by genome mining in Streptomyces sp. strain fd1-xmd. Applied Microbiology and Biotechnology, 102(6):2621-2633
  30. Chengshuai Yang#, Weichao Li#, Chen Li#, Zhihua Zhou*, Youli Xiao*, Xing Yan* (2018). Metabolism of ganoderic acids by a Ganoderma lucidum cytochrome P450 and the 3-keto sterol reductase ERG27 from yeast. Phytochemistry, 155:83-92
  31. Lei X, Wang L, Zhao G*, Ding X* (2018). Site-specificity of serine integrase demonstrated by the attB sequence preference of ɸBT1 integrase. FEBS Lett, 592(8):1389-1399
  32. Yiqing Zhou, Youli Xiao* (2018). Target Identification of Bioactive Natural Products (活性天然产物靶标蛋白的鉴定). Acta Chimica Sinica, 76:177-189
  33. Zhang Y, Zhang Y, Li P, Wang Y, Wang J, Shao Z*, Zhao G* (2018). GlnR positive transcriptional regulation of the phosphate-specific transport system pstSCAB in Amycolatopsis mediterranei U32. Acta Biochimica et Biophysica Sinica, 50(8):757-765
  34. Shen FZ#, Wu XT#, Shi LX, Zhang H, Chen YM, Qi XQ, Wang Z*, Li X* (2018). Transcriptomic and metabolic flux analyses reveal shift of metabolic patterns during rice grain development. BMC Systems Biology, 12(Suppl 4):47
  35. Shiwen Wu#, Mengquan Yang#, Youli Xiao* (2018). Synthetic Biology Studies of Monoterpene Indole Alkaloids(单萜吲哚生物碱的合成生物学研究进展). Chinese Journal of Organic Chemistry, 2243-2258
  36. Haili Liu, Hengchao E, Dingan Xie, Wenbo Cheng, Wanqi Tao, Yong Wang* (2018). Acylated aminoolisaccharides with inhibitory effects against a-amylase from Streptomyces sp. HO1518. Marine drugs, 16(11):403
  37. Li L, Jiang WH*, Lu YH* (2018). A modified Gibson assembly method for cloning large DNA fragments with high GC Contents. Methods Mol Biol, 1671:203-209
  38. Shiwen Wu, Zhen Fan, Youli Xiao* (2018). Comprehensive relative quantitative metabolomics analysis of lycopodium alkaloids in different tissues of Huperzia serrata. Synthetic and Systems Biotechnology, 3:44-55
 
 
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